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customarraytm 12k microarray  (CombiMatrix)

 
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    CombiMatrix customarraytm 12k microarray
    Customarraytm 12k Microarray, supplied by CombiMatrix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/customarraytm+12k+microarrays/4x2k+custom+array/us09983204-589-4-4
    Average 90 stars, based on 1 article reviews
    customarraytm 12k microarray - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Labeling:

    Article Title: β-Naphthoflavone induces oxidative stress in the intertidal copepod, Tigriopus japonicus.
    Article Snippet: b-Naphtoflavone (b-NF) is a flavonoid and enhances oxidative stress in vertebrates with little information from aquatic invertebrates as yet.. In this study, we investigated the effects of b-NF on the antioxidant defense systems of the intertidal copepod Tigriopus japonicus.. To measure the b-NFtriggered changes in oxidative stress markers, such as intracellular reactive oxygen species (ROS), glutathione (GSH) concentration, residual glutathione S-transferase (GST), glutathione peroxidase (GPx), glutathione reductase (GR), and superoxide dismutase (SOD) activity, T. japonicus were exposed to b-NF (0.5 and 1 mg/L) for 72 h. Significant (P< 0.05) induction of the intracellular ROS content (%) was observed in 1 mg/L of b-NF exposed T. japonicus, compared to the negative control and H2O2-exposed group.

    Hybridization:

    Article Title: β-Naphthoflavone induces oxidative stress in the intertidal copepod, Tigriopus japonicus.
    Article Snippet: b-Naphtoflavone (b-NF) is a flavonoid and enhances oxidative stress in vertebrates with little information from aquatic invertebrates as yet.. In this study, we investigated the effects of b-NF on the antioxidant defense systems of the intertidal copepod Tigriopus japonicus.. To measure the b-NFtriggered changes in oxidative stress markers, such as intracellular reactive oxygen species (ROS), glutathione (GSH) concentration, residual glutathione S-transferase (GST), glutathione peroxidase (GPx), glutathione reductase (GR), and superoxide dismutase (SOD) activity, T. japonicus were exposed to b-NF (0.5 and 1 mg/L) for 72 h. Significant (P< 0.05) induction of the intracellular ROS content (%) was observed in 1 mg/L of b-NF exposed T. japonicus, compared to the negative control and H2O2-exposed group.

    Imaging:

    Article Title: β-Naphthoflavone induces oxidative stress in the intertidal copepod, Tigriopus japonicus.
    Article Snippet: b-Naphtoflavone (b-NF) is a flavonoid and enhances oxidative stress in vertebrates with little information from aquatic invertebrates as yet.. In this study, we investigated the effects of b-NF on the antioxidant defense systems of the intertidal copepod Tigriopus japonicus.. To measure the b-NFtriggered changes in oxidative stress markers, such as intracellular reactive oxygen species (ROS), glutathione (GSH) concentration, residual glutathione S-transferase (GST), glutathione peroxidase (GPx), glutathione reductase (GR), and superoxide dismutase (SOD) activity, T. japonicus were exposed to b-NF (0.5 and 1 mg/L) for 72 h. Significant (P< 0.05) induction of the intracellular ROS content (%) was observed in 1 mg/L of b-NF exposed T. japonicus, compared to the negative control and H2O2-exposed group.

    Expressing:

    Article Title: PHOSPHORUS ACCUMULATING ORGANISMS REVEAL THEIR SECRETS: A GENOME LEVEL UNDERSTANDING OF ENHANCED BIOLOGICAL PHOSPHORUS REMOVAL
    Article Snippet: Genome-enabled analyses of microbial communities have generated tremendous insight into the structure and functioning of these complex assemblages.. The recent sequencing of the metagenome of an enhanced biological phosphorus removal (EBPR) sludge has created the opportunity to study the expression of genes and pathways involved in this metabolism.. Here we present preliminary data obtained through a multidisciplinary collaboration between engineers, microbiologists, and bioinformaticists, all focused on unraveling the basis for this remarkable metabolism that is used so widely for phosphorus removal from wastewaters.



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    Custom microarrays analysis . A) Bar plot of UCEs expressed across 4 mouse developmental stages tested (ES, E12.5, E14.5 and E16.5) based on the analysis of our UCE custom <t>microarray.</t> Blue bars indicate UCEs which show expression on a single strand, green columns indicate UCEs which show expression on both strands B) Venn diagram of UCE transcription results showing the overlap across the 4 stages analyzed. More than half (n = 140, 56%) of the transcribed UCEs are expressed in all the stages analyzed.
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    Custom microarrays analysis . A) Bar plot of UCEs expressed across 4 mouse developmental stages tested (ES, E12.5, E14.5 and E16.5) based on the analysis of our UCE custom <t>microarray.</t> Blue bars indicate UCEs which show expression on a single strand, green columns indicate UCEs which show expression on both strands B) Venn diagram of UCE transcription results showing the overlap across the 4 stages analyzed. More than half (n = 140, 56%) of the transcribed UCEs are expressed in all the stages analyzed.
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    Image Search Results


    Custom microarrays analysis . A) Bar plot of UCEs expressed across 4 mouse developmental stages tested (ES, E12.5, E14.5 and E16.5) based on the analysis of our UCE custom microarray. Blue bars indicate UCEs which show expression on a single strand, green columns indicate UCEs which show expression on both strands B) Venn diagram of UCE transcription results showing the overlap across the 4 stages analyzed. More than half (n = 140, 56%) of the transcribed UCEs are expressed in all the stages analyzed.

    Journal: BMC Genomics

    Article Title: Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements

    doi: 10.1186/1471-2164-11-151

    Figure Lengend Snippet: Custom microarrays analysis . A) Bar plot of UCEs expressed across 4 mouse developmental stages tested (ES, E12.5, E14.5 and E16.5) based on the analysis of our UCE custom microarray. Blue bars indicate UCEs which show expression on a single strand, green columns indicate UCEs which show expression on both strands B) Venn diagram of UCE transcription results showing the overlap across the 4 stages analyzed. More than half (n = 140, 56%) of the transcribed UCEs are expressed in all the stages analyzed.

    Article Snippet: We therefore designed a custom microarray (CustomarrayTM 12K arrays from Combimatrix, Mukilteo, WA) encompassing 3 different probes on each DNA strand of UCEs (of the currently annotated 481 UCEs, probes could be designed for 475), as well as a large number of negative controls (exogenous sequences from bacteria and plants, negative controls used in the Affymetrix platform, rRNAs sequences), which were used to assess the levels of background signal.

    Techniques: Microarray, Expressing

    UCEs transcription and enhancer function overlap . Overlap between the enhancer dataset (Pennacchio et al, 2006) and the mouse microarray dataset in all samples analyzed, divided by stage. The yellow portion of each bar indicates UCEs that are only transcribed, the green portion UCEs that are transcribed and act as enhancers, the blue portion UCEs that are only transcribed.

    Journal: BMC Genomics

    Article Title: Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements

    doi: 10.1186/1471-2164-11-151

    Figure Lengend Snippet: UCEs transcription and enhancer function overlap . Overlap between the enhancer dataset (Pennacchio et al, 2006) and the mouse microarray dataset in all samples analyzed, divided by stage. The yellow portion of each bar indicates UCEs that are only transcribed, the green portion UCEs that are transcribed and act as enhancers, the blue portion UCEs that are only transcribed.

    Article Snippet: We therefore designed a custom microarray (CustomarrayTM 12K arrays from Combimatrix, Mukilteo, WA) encompassing 3 different probes on each DNA strand of UCEs (of the currently annotated 481 UCEs, probes could be designed for 475), as well as a large number of negative controls (exogenous sequences from bacteria and plants, negative controls used in the Affymetrix platform, rRNAs sequences), which were used to assess the levels of background signal.

    Techniques: Microarray

    UCE classification using External datasets . A) Comparison between the mouse enhancer dataset (Pennacchio et al. 2006) (green oval), our mouse development microarray dataset, (red oval), the human UCE expression dataset (Calin et al. 2007) (blue oval) and the mouse ES cell SOLiD expression dataset (Cloonan et al. 2008) (orange oval). B) Comparison of the SOLiD ES cell RNAseq dataset (Cloonan et al. 2008) for UCEs vs. randomly chosen non-transcribed genomic regions (outliers not shown).

    Journal: BMC Genomics

    Article Title: Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements

    doi: 10.1186/1471-2164-11-151

    Figure Lengend Snippet: UCE classification using External datasets . A) Comparison between the mouse enhancer dataset (Pennacchio et al. 2006) (green oval), our mouse development microarray dataset, (red oval), the human UCE expression dataset (Calin et al. 2007) (blue oval) and the mouse ES cell SOLiD expression dataset (Cloonan et al. 2008) (orange oval). B) Comparison of the SOLiD ES cell RNAseq dataset (Cloonan et al. 2008) for UCEs vs. randomly chosen non-transcribed genomic regions (outliers not shown).

    Article Snippet: We therefore designed a custom microarray (CustomarrayTM 12K arrays from Combimatrix, Mukilteo, WA) encompassing 3 different probes on each DNA strand of UCEs (of the currently annotated 481 UCEs, probes could be designed for 475), as well as a large number of negative controls (exogenous sequences from bacteria and plants, negative controls used in the Affymetrix platform, rRNAs sequences), which were used to assess the levels of background signal.

    Techniques: Comparison, Microarray, Expressing